I actually have a supertrapp on my '96. I can't bad mouth it, as I really don't have a lot to compare it on - it was there when I purchased it. Offhand I believe it had 8 disks on it, I can go count for sure. I have not messed with the jetting at all, and with the exception of the pipe it's completely stock.
In the six months I've owned it, it's been great so far. I plan on going to a K&N sometime this summer if finances can support it and from there I'll get a jetting kit and go through the whole process. I don't have any complaints against it and it does sound great (in my opinion). A friend who has a stock 400ex was riding with me and commented that he really needs an aftermarket pipe and that he loved the sound of mine.
Anyways, that's my two cents - sorry I can't be of more help at this time as I don't have much to compare it to. Oh the other thing, it isn't overly loud, it's got a nice rumble to it when you rev up but idle is mild and has a nice tone. I personally wouldn't want one that is TOO loud (no offense to all of you people here that can't seem to get it loud enough haha).
You can see pics here
http://yfm350.proboards31.com/index.cgi?board=welcome&action=display&thread=1130987998